NAME Bio::IlluminaSAV - Parse Illumina SAV files SYNOPSIS Routines for parsing and extracting information from Illumina SAV files (aka "InterOp"). use IlluminaSAV; my $savs = IlluminaSAV->new("/path/to/rundirectory"); my @qmetrics = $savs->quality_metrics(); my $cur_cycle = $savs->cur_cycle(); my $num_reads = $savs->num_reads(); DESCRIPTION Easy access to Illumina's SAV file data. AUTHOR Andrew Hoerter & Erik Aronesty, COPYRIGHT AND LICENSE Copyright (C) 2013 Erik Aronesty / Expression Analysis This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.10.1 or, at your option, any later version of Perl 5 you may have available. CONSTANTS # constants you can use TILE_METRIC_CLUST_DENS TILE_METRIC_PF_CLUST_DENS TILE_METRIC_NUM_CLUSTERS TILE_METRIC_NUM_PF_CLUSTERS TILE_METRIC_CONTROL_LANE FUNCTIONS cur_cycle Return the current run extraction cycle cur_copy_cycle Return the current copy cycle max_cycles Return the maximum number of cycles num_lanes Return the number of lanes num_reads Return the number of reads run_info Returns a hash with RunInfo.xml info extraction_metrics Load extraction metrics quality_metrics Load quality metrics error_metrics Load error metrics tile_metrics Load tile metrics corrected_int_metrics Load corrected int metrics control_metrics Load control metrics image_metrics Load image metrics parse_sav_file(PATHNAME) Load binary SAV-format file PATHNAME, inferring the type from the filename